Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.
Identifieur interne : 000077 ( Main/Exploration ); précédent : 000076; suivant : 000078Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.
Auteurs : Abbot O. Oghenekaro [Nigeria, Finlande, Canada] ; Andriy Kovalchuk [Finlande] ; Tommaso Raffaello [Finlande] ; Susana Camarero [Espagne] ; Markus Gressler [Allemagne] ; Bernard Henrissat [France, Arabie saoudite] ; Juna Lee [États-Unis] ; Mengxia Liu [Finlande] ; Angel T. Martínez [Espagne] ; Otto Miettinen [Finlande] ; Sirma Mihaltcheva [États-Unis] ; Jasmyn Pangilinan [États-Unis] ; Fei Ren [Finlande, République populaire de Chine] ; Robert Riley [États-Unis] ; Francisco Javier Ruiz-Due As [Espagne] ; Ana Serrano [Espagne] ; Michael R. Thon [Espagne] ; Zilan Wen [Finlande] ; Zhen Zeng [Finlande] ; Kerrie Barry [États-Unis] ; Igor V. Grigoriev [États-Unis] ; Francis Martin [France] ; Fred O. Asiegbu [Finlande]Source :
- Scientific reports [ 2045-2322 ] ; 2020.
Abstract
Fungal plant pathogens remain a serious threat to the sustainable agriculture and forestry, despite the extensive efforts undertaken to control their spread. White root rot disease is threatening rubber tree (Hevea brasiliensis) plantations throughout South and Southeast Asia and Western Africa, causing tree mortality and severe yield losses. Here, we report the complete genome sequence of the basidiomycete fungus Rigidoporus microporus, a causative agent of the disease. Our phylogenetic analysis confirmed the position of R. microporus among the members of Hymenochaetales, an understudied group of basidiomycetes. Our analysis further identified pathogen's genes with a predicted role in the decay of plant cell wall polymers, in the utilization of latex components and in interspecific interactions between the pathogen and other fungi. We also detected putative horizontal gene transfer events in the genome of R. microporus. The reported first genome sequence of a tropical rubber tree pathogen R. microporus should contribute to the better understanding of how the fungus is able to facilitate wood decay and nutrient cycling as well as tolerate latex and utilize resinous extractives.
DOI: 10.1038/s41598-020-62150-4
PubMed: 32251355
PubMed Central: PMC7089950
Affiliations:
- Allemagne, Arabie saoudite, Canada, Espagne, Finlande, France, Nigeria, République populaire de Chine, États-Unis
- Communauté de Madrid, Grand Est, Lorraine (région), Manitoba, Provence-Alpes-Côte d'Azur, Uusimaa
- Champenoux, Helsinki, Madrid, Marseille, Pékin, Winnipeg
- Université d'Aix-Marseille, Université d'Helsinki, Université du Manitoba
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.</title><author><name sortKey="Oghenekaro, Abbot O" sort="Oghenekaro, Abbot O" uniqKey="Oghenekaro A" first="Abbot O" last="Oghenekaro">Abbot O. Oghenekaro</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Life Sciences, Department of Plant Biology and Biotechnology, University of Benin, P.M.B 1154, Benin City, Nigeria.</nlm:affiliation><country xml:lang="fr">Nigeria</country><wicri:regionArea>Faculty of Life Sciences, Department of Plant Biology and Biotechnology, University of Benin, P.M.B 1154, Benin City</wicri:regionArea><wicri:noRegion>Benin City</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, University of Manitoba, MB R3T 2N2, Winnipeg, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Plant Science, University of Manitoba, MB R3T 2N2, Winnipeg</wicri:regionArea><orgName type="university">Université du Manitoba</orgName><placeName><settlement type="city">Winnipeg</settlement><region type="state">Manitoba</region></placeName></affiliation></author><author><name sortKey="Kovalchuk, Andriy" sort="Kovalchuk, Andriy" uniqKey="Kovalchuk A" first="Andriy" last="Kovalchuk">Andriy Kovalchuk</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Raffaello, Tommaso" sort="Raffaello, Tommaso" uniqKey="Raffaello T" first="Tommaso" last="Raffaello">Tommaso Raffaello</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Camarero, Susana" sort="Camarero, Susana" uniqKey="Camarero S" first="Susana" last="Camarero">Susana Camarero</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Gressler, Markus" sort="Gressler, Markus" uniqKey="Gressler M" first="Markus" last="Gressler">Markus Gressler</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pharmaceutical Microbiology at the Hans Knöll Institute, Friedrich Schiller University, Jena, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Pharmaceutical Microbiology at the Hans Knöll Institute, Friedrich Schiller University, Jena</wicri:regionArea><wicri:noRegion>Jena</wicri:noRegion><wicri:noRegion>Jena</wicri:noRegion><wicri:noRegion>Jena</wicri:noRegion></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation wicri:level="4"><nlm:affiliation>Aix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, CNRS, UMR 7257, 13288, Marseille, cedex 9, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Aix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, CNRS, UMR 7257, 13288, Marseille, cedex 9</wicri:regionArea><wicri:noRegion>cedex 9</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>USC1408 Architecture et Fonction des Macromolécules Biologiques, Institut National de la Recherche Agronomique, F-13288, Marseille, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>USC1408 Architecture et Fonction des Macromolécules Biologiques, Institut National de la Recherche Agronomique, F-13288, Marseille</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, 23218, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>Department of Biological Sciences, King Abdulaziz University, 23218, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Lee, Juna" sort="Lee, Juna" uniqKey="Lee J" first="Juna" last="Lee">Juna Lee</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Mengxia" sort="Liu, Mengxia" uniqKey="Liu M" first="Mengxia" last="Liu">Mengxia Liu</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Martinez, Angel T" sort="Martinez, Angel T" uniqKey="Martinez A" first="Angel T" last="Martínez">Angel T. Martínez</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Miettinen, Otto" sort="Miettinen, Otto" uniqKey="Miettinen O" first="Otto" last="Miettinen">Otto Miettinen</name><affiliation wicri:level="4"><nlm:affiliation>Mycology Unit, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Mycology Unit, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Mihaltcheva, Sirma" sort="Mihaltcheva, Sirma" uniqKey="Mihaltcheva S" first="Sirma" last="Mihaltcheva">Sirma Mihaltcheva</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Pangilinan, Jasmyn" sort="Pangilinan, Jasmyn" uniqKey="Pangilinan J" first="Jasmyn" last="Pangilinan">Jasmyn Pangilinan</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Ren, Fei" sort="Ren, Fei" uniqKey="Ren F" first="Fei" last="Ren">Fei Ren</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Forestry experiment center of north China, Chinese Academy of Forestry, 102300, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forestry experiment center of north China, Chinese Academy of Forestry, 102300, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Ruiz Due As, Francisco Javier" sort="Ruiz Due As, Francisco Javier" uniqKey="Ruiz Due As F" first="Francisco Javier" last="Ruiz-Due As">Francisco Javier Ruiz-Due As</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Serrano, Ana" sort="Serrano, Ana" uniqKey="Serrano A" first="Ana" last="Serrano">Ana Serrano</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Thon, Michael R" sort="Thon, Michael R" uniqKey="Thon M" first="Michael R" last="Thon">Michael R. Thon</name><affiliation wicri:level="1"><nlm:affiliation>Universidad de Salamanca, Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Villamayor, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Universidad de Salamanca, Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Villamayor</wicri:regionArea><wicri:noRegion>Villamayor</wicri:noRegion></affiliation></author><author><name sortKey="Wen, Zilan" sort="Wen, Zilan" uniqKey="Wen Z" first="Zilan" last="Wen">Zilan Wen</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Zeng, Zhen" sort="Zeng, Zhen" uniqKey="Zeng Z" first="Zhen" last="Zeng">Zhen Zeng</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Barry, Kerrie" sort="Barry, Kerrie" uniqKey="Barry K" first="Kerrie" last="Barry">Kerrie Barry</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation wicri:level="3"><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName></affiliation></author><author><name sortKey="Asiegbu, Fred O" sort="Asiegbu, Fred O" uniqKey="Asiegbu F" first="Fred O" last="Asiegbu">Fred O. Asiegbu</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland. Fred.Asiegbu@helsinki.fi.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32251355</idno><idno type="pmid">32251355</idno><idno type="doi">10.1038/s41598-020-62150-4</idno><idno type="pmc">PMC7089950</idno><idno type="wicri:Area/Main/Corpus">000132</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000132</idno><idno type="wicri:Area/Main/Curation">000132</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000132</idno><idno type="wicri:Area/Main/Exploration">000132</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.</title><author><name sortKey="Oghenekaro, Abbot O" sort="Oghenekaro, Abbot O" uniqKey="Oghenekaro A" first="Abbot O" last="Oghenekaro">Abbot O. Oghenekaro</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Life Sciences, Department of Plant Biology and Biotechnology, University of Benin, P.M.B 1154, Benin City, Nigeria.</nlm:affiliation><country xml:lang="fr">Nigeria</country><wicri:regionArea>Faculty of Life Sciences, Department of Plant Biology and Biotechnology, University of Benin, P.M.B 1154, Benin City</wicri:regionArea><wicri:noRegion>Benin City</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Science, University of Manitoba, MB R3T 2N2, Winnipeg, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Plant Science, University of Manitoba, MB R3T 2N2, Winnipeg</wicri:regionArea><orgName type="university">Université du Manitoba</orgName><placeName><settlement type="city">Winnipeg</settlement><region type="state">Manitoba</region></placeName></affiliation></author><author><name sortKey="Kovalchuk, Andriy" sort="Kovalchuk, Andriy" uniqKey="Kovalchuk A" first="Andriy" last="Kovalchuk">Andriy Kovalchuk</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Raffaello, Tommaso" sort="Raffaello, Tommaso" uniqKey="Raffaello T" first="Tommaso" last="Raffaello">Tommaso Raffaello</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Camarero, Susana" sort="Camarero, Susana" uniqKey="Camarero S" first="Susana" last="Camarero">Susana Camarero</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Gressler, Markus" sort="Gressler, Markus" uniqKey="Gressler M" first="Markus" last="Gressler">Markus Gressler</name><affiliation wicri:level="1"><nlm:affiliation>Department of Pharmaceutical Microbiology at the Hans Knöll Institute, Friedrich Schiller University, Jena, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Pharmaceutical Microbiology at the Hans Knöll Institute, Friedrich Schiller University, Jena</wicri:regionArea><wicri:noRegion>Jena</wicri:noRegion><wicri:noRegion>Jena</wicri:noRegion><wicri:noRegion>Jena</wicri:noRegion></affiliation></author><author><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><affiliation wicri:level="4"><nlm:affiliation>Aix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, CNRS, UMR 7257, 13288, Marseille, cedex 9, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Aix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, CNRS, UMR 7257, 13288, Marseille, cedex 9</wicri:regionArea><wicri:noRegion>cedex 9</wicri:noRegion><orgName type="university">Université d'Aix-Marseille</orgName><placeName><settlement type="city">Marseille</settlement><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>USC1408 Architecture et Fonction des Macromolécules Biologiques, Institut National de la Recherche Agronomique, F-13288, Marseille, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>USC1408 Architecture et Fonction des Macromolécules Biologiques, Institut National de la Recherche Agronomique, F-13288, Marseille</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, King Abdulaziz University, 23218, Jeddah, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>Department of Biological Sciences, King Abdulaziz University, 23218, Jeddah</wicri:regionArea><wicri:noRegion>Jeddah</wicri:noRegion></affiliation></author><author><name sortKey="Lee, Juna" sort="Lee, Juna" uniqKey="Lee J" first="Juna" last="Lee">Juna Lee</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Mengxia" sort="Liu, Mengxia" uniqKey="Liu M" first="Mengxia" last="Liu">Mengxia Liu</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Martinez, Angel T" sort="Martinez, Angel T" uniqKey="Martinez A" first="Angel T" last="Martínez">Angel T. Martínez</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Miettinen, Otto" sort="Miettinen, Otto" uniqKey="Miettinen O" first="Otto" last="Miettinen">Otto Miettinen</name><affiliation wicri:level="4"><nlm:affiliation>Mycology Unit, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Mycology Unit, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Mihaltcheva, Sirma" sort="Mihaltcheva, Sirma" uniqKey="Mihaltcheva S" first="Sirma" last="Mihaltcheva">Sirma Mihaltcheva</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Pangilinan, Jasmyn" sort="Pangilinan, Jasmyn" uniqKey="Pangilinan J" first="Jasmyn" last="Pangilinan">Jasmyn Pangilinan</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Ren, Fei" sort="Ren, Fei" uniqKey="Ren F" first="Fei" last="Ren">Fei Ren</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Forestry experiment center of north China, Chinese Academy of Forestry, 102300, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Forestry experiment center of north China, Chinese Academy of Forestry, 102300, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Ruiz Due As, Francisco Javier" sort="Ruiz Due As, Francisco Javier" uniqKey="Ruiz Due As F" first="Francisco Javier" last="Ruiz-Due As">Francisco Javier Ruiz-Due As</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Serrano, Ana" sort="Serrano, Ana" uniqKey="Serrano A" first="Ana" last="Serrano">Ana Serrano</name><affiliation wicri:level="3"><nlm:affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author><author><name sortKey="Thon, Michael R" sort="Thon, Michael R" uniqKey="Thon M" first="Michael R" last="Thon">Michael R. Thon</name><affiliation wicri:level="1"><nlm:affiliation>Universidad de Salamanca, Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Villamayor, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Universidad de Salamanca, Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Villamayor</wicri:regionArea><wicri:noRegion>Villamayor</wicri:noRegion></affiliation></author><author><name sortKey="Wen, Zilan" sort="Wen, Zilan" uniqKey="Wen Z" first="Zilan" last="Wen">Zilan Wen</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Zeng, Zhen" sort="Zeng, Zhen" uniqKey="Zeng Z" first="Zhen" last="Zeng">Zhen Zeng</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Barry, Kerrie" sort="Barry, Kerrie" uniqKey="Barry K" first="Kerrie" last="Barry">Kerrie Barry</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><affiliation wicri:level="1"><nlm:affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720</wicri:regionArea><wicri:noRegion>94720</wicri:noRegion></affiliation></author><author><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><affiliation wicri:level="3"><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName></affiliation></author><author><name sortKey="Asiegbu, Fred O" sort="Asiegbu, Fred O" uniqKey="Asiegbu F" first="Fred O" last="Asiegbu">Fred O. Asiegbu</name><affiliation wicri:level="4"><nlm:affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland. Fred.Asiegbu@helsinki.fi.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Fungal plant pathogens remain a serious threat to the sustainable agriculture and forestry, despite the extensive efforts undertaken to control their spread. White root rot disease is threatening rubber tree (Hevea brasiliensis) plantations throughout South and Southeast Asia and Western Africa, causing tree mortality and severe yield losses. Here, we report the complete genome sequence of the basidiomycete fungus Rigidoporus microporus, a causative agent of the disease. Our phylogenetic analysis confirmed the position of R. microporus among the members of Hymenochaetales, an understudied group of basidiomycetes. Our analysis further identified pathogen's genes with a predicted role in the decay of plant cell wall polymers, in the utilization of latex components and in interspecific interactions between the pathogen and other fungi. We also detected putative horizontal gene transfer events in the genome of R. microporus. The reported first genome sequence of a tropical rubber tree pathogen R. microporus should contribute to the better understanding of how the fungus is able to facilitate wood decay and nutrient cycling as well as tolerate latex and utilize resinous extractives.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">32251355</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>20</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><Issue>1</Issue><PubDate><Year>2020</Year><Month>03</Month><Day>23</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.</ArticleTitle><Pagination><MedlinePgn>5250</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-020-62150-4</ELocationID><Abstract><AbstractText>Fungal plant pathogens remain a serious threat to the sustainable agriculture and forestry, despite the extensive efforts undertaken to control their spread. White root rot disease is threatening rubber tree (Hevea brasiliensis) plantations throughout South and Southeast Asia and Western Africa, causing tree mortality and severe yield losses. Here, we report the complete genome sequence of the basidiomycete fungus Rigidoporus microporus, a causative agent of the disease. Our phylogenetic analysis confirmed the position of R. microporus among the members of Hymenochaetales, an understudied group of basidiomycetes. Our analysis further identified pathogen's genes with a predicted role in the decay of plant cell wall polymers, in the utilization of latex components and in interspecific interactions between the pathogen and other fungi. We also detected putative horizontal gene transfer events in the genome of R. microporus. The reported first genome sequence of a tropical rubber tree pathogen R. microporus should contribute to the better understanding of how the fungus is able to facilitate wood decay and nutrient cycling as well as tolerate latex and utilize resinous extractives.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Oghenekaro</LastName><ForeName>Abbot O</ForeName><Initials>AO</Initials><Identifier Source="ORCID">http://orcid.org/0000-0003-3725-9529</Identifier><AffiliationInfo><Affiliation>Faculty of Life Sciences, Department of Plant Biology and Biotechnology, University of Benin, P.M.B 1154, Benin City, Nigeria.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Science, University of Manitoba, MB R3T 2N2, Winnipeg, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kovalchuk</LastName><ForeName>Andriy</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Raffaello</LastName><ForeName>Tommaso</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Camarero</LastName><ForeName>Susana</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gressler</LastName><ForeName>Markus</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Pharmaceutical Microbiology at the Hans Knöll Institute, Friedrich Schiller University, Jena, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Henrissat</LastName><ForeName>Bernard</ForeName><Initials>B</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3434-8588</Identifier><AffiliationInfo><Affiliation>Aix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, CNRS, UMR 7257, 13288, Marseille, cedex 9, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>USC1408 Architecture et Fonction des Macromolécules Biologiques, Institut National de la Recherche Agronomique, F-13288, Marseille, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biological Sciences, King Abdulaziz University, 23218, Jeddah, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Juna</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Mengxia</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martínez</LastName><ForeName>Angel T</ForeName><Initials>AT</Initials><AffiliationInfo><Affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Miettinen</LastName><ForeName>Otto</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Mycology Unit, Botanical Museum, Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mihaltcheva</LastName><ForeName>Sirma</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pangilinan</LastName><ForeName>Jasmyn</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Fei</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Forestry experiment center of north China, Chinese Academy of Forestry, 102300, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Riley</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruiz-Dueñas</LastName><ForeName>Francisco Javier</ForeName><Initials>FJ</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-9837-5665</Identifier><AffiliationInfo><Affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Serrano</LastName><ForeName>Ana</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu 9, E28040, Madrid, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thon</LastName><ForeName>Michael R</ForeName><Initials>MR</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-7225-7003</Identifier><AffiliationInfo><Affiliation>Universidad de Salamanca, Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Villamayor, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wen</LastName><ForeName>Zilan</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zeng</LastName><ForeName>Zhen</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barry</LastName><ForeName>Kerrie</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grigoriev</LastName><ForeName>Igor V</ForeName><Initials>IV</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-3136-8903</Identifier><AffiliationInfo><Affiliation>US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, 94720, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Francis</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Institut National de la Recherche Agronomique (INRA), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE), UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>University of Lorraine, Laboratory of Excellence ARBRE, UMR 1136, Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Asiegbu</LastName><ForeName>Fred O</ForeName><Initials>FO</Initials><AffiliationInfo><Affiliation>Faculty of Agriculture and Forestry, Department of Forest Sciences, University of Helsinki, P.O. Box 27, FIN-00014, Helsinki, Finland. Fred.Asiegbu@helsinki.fi.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Sci Rep</MedlineTA><NlmUniqueID>101563288</NlmUniqueID><ISSNLinking>2045-2322</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Sci Rep. 2020 Oct 20;10(1):18199</RefSource><PMID Version="1">33082478</PMID></CommentsCorrections></CommentsCorrectionsList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>10</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>03</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>4</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>4</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>4</Month><Day>7</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32251355</ArticleId><ArticleId IdType="doi">10.1038/s41598-020-62150-4</ArticleId><ArticleId IdType="pii">10.1038/s41598-020-62150-4</ArticleId><ArticleId IdType="pmc">PMC7089950</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Arabie saoudite</li><li>Canada</li><li>Espagne</li><li>Finlande</li><li>France</li><li>Nigeria</li><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Communauté de Madrid</li><li>Grand Est</li><li>Lorraine (région)</li><li>Manitoba</li><li>Provence-Alpes-Côte d'Azur</li><li>Uusimaa</li></region><settlement><li>Champenoux</li><li>Helsinki</li><li>Madrid</li><li>Marseille</li><li>Pékin</li><li>Winnipeg</li></settlement><orgName><li>Université d'Aix-Marseille</li><li>Université d'Helsinki</li><li>Université du Manitoba</li></orgName></list><tree><country name="Nigeria"><noRegion><name sortKey="Oghenekaro, Abbot O" sort="Oghenekaro, Abbot O" uniqKey="Oghenekaro A" first="Abbot O" last="Oghenekaro">Abbot O. Oghenekaro</name></noRegion></country><country name="Finlande"><region name="Uusimaa"><name sortKey="Oghenekaro, Abbot O" sort="Oghenekaro, Abbot O" uniqKey="Oghenekaro A" first="Abbot O" last="Oghenekaro">Abbot O. Oghenekaro</name></region><name sortKey="Asiegbu, Fred O" sort="Asiegbu, Fred O" uniqKey="Asiegbu F" first="Fred O" last="Asiegbu">Fred O. Asiegbu</name><name sortKey="Kovalchuk, Andriy" sort="Kovalchuk, Andriy" uniqKey="Kovalchuk A" first="Andriy" last="Kovalchuk">Andriy Kovalchuk</name><name sortKey="Liu, Mengxia" sort="Liu, Mengxia" uniqKey="Liu M" first="Mengxia" last="Liu">Mengxia Liu</name><name sortKey="Miettinen, Otto" sort="Miettinen, Otto" uniqKey="Miettinen O" first="Otto" last="Miettinen">Otto Miettinen</name><name sortKey="Raffaello, Tommaso" sort="Raffaello, Tommaso" uniqKey="Raffaello T" first="Tommaso" last="Raffaello">Tommaso Raffaello</name><name sortKey="Ren, Fei" sort="Ren, Fei" uniqKey="Ren F" first="Fei" last="Ren">Fei Ren</name><name sortKey="Wen, Zilan" sort="Wen, Zilan" uniqKey="Wen Z" first="Zilan" last="Wen">Zilan Wen</name><name sortKey="Zeng, Zhen" sort="Zeng, Zhen" uniqKey="Zeng Z" first="Zhen" last="Zeng">Zhen Zeng</name></country><country name="Canada"><region name="Manitoba"><name sortKey="Oghenekaro, Abbot O" sort="Oghenekaro, Abbot O" uniqKey="Oghenekaro A" first="Abbot O" last="Oghenekaro">Abbot O. Oghenekaro</name></region></country><country name="Espagne"><region name="Communauté de Madrid"><name sortKey="Camarero, Susana" sort="Camarero, Susana" uniqKey="Camarero S" first="Susana" last="Camarero">Susana Camarero</name></region><name sortKey="Martinez, Angel T" sort="Martinez, Angel T" uniqKey="Martinez A" first="Angel T" last="Martínez">Angel T. Martínez</name><name sortKey="Ruiz Due As, Francisco Javier" sort="Ruiz Due As, Francisco Javier" uniqKey="Ruiz Due As F" first="Francisco Javier" last="Ruiz-Due As">Francisco Javier Ruiz-Due As</name><name sortKey="Serrano, Ana" sort="Serrano, Ana" uniqKey="Serrano A" first="Ana" last="Serrano">Ana Serrano</name><name sortKey="Thon, Michael R" sort="Thon, Michael R" uniqKey="Thon M" first="Michael R" last="Thon">Michael R. Thon</name></country><country name="Allemagne"><noRegion><name sortKey="Gressler, Markus" sort="Gressler, Markus" uniqKey="Gressler M" first="Markus" last="Gressler">Markus Gressler</name></noRegion></country><country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name></region><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name><name sortKey="Martin, Francis" sort="Martin, Francis" uniqKey="Martin F" first="Francis" last="Martin">Francis Martin</name></country><country name="Arabie saoudite"><noRegion><name sortKey="Henrissat, Bernard" sort="Henrissat, Bernard" uniqKey="Henrissat B" first="Bernard" last="Henrissat">Bernard Henrissat</name></noRegion></country><country name="États-Unis"><noRegion><name sortKey="Lee, Juna" sort="Lee, Juna" uniqKey="Lee J" first="Juna" last="Lee">Juna Lee</name></noRegion><name sortKey="Barry, Kerrie" sort="Barry, Kerrie" uniqKey="Barry K" first="Kerrie" last="Barry">Kerrie Barry</name><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><name sortKey="Grigoriev, Igor V" sort="Grigoriev, Igor V" uniqKey="Grigoriev I" first="Igor V" last="Grigoriev">Igor V. Grigoriev</name><name sortKey="Mihaltcheva, Sirma" sort="Mihaltcheva, Sirma" uniqKey="Mihaltcheva S" first="Sirma" last="Mihaltcheva">Sirma Mihaltcheva</name><name sortKey="Pangilinan, Jasmyn" sort="Pangilinan, Jasmyn" uniqKey="Pangilinan J" first="Jasmyn" last="Pangilinan">Jasmyn Pangilinan</name><name sortKey="Riley, Robert" sort="Riley, Robert" uniqKey="Riley R" first="Robert" last="Riley">Robert Riley</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Ren, Fei" sort="Ren, Fei" uniqKey="Ren F" first="Fei" last="Ren">Fei Ren</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/WhiteRotV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000077 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000077 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= WhiteRotV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:32251355
|texte= Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32251355" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a WhiteRotV1
| This area was generated with Dilib version V0.6.37. |  |